The house became the center of a boundary dispute by the middle of the 18th century. At the time, both Bushwick and Newtown claimed rights to tax the property, believing the home was located within their respective boundaries. Finally, in 1769, the boundary dispute was cleared up when a rock, known as Arbitration Rock, was placed on the property to mark the boundary between the towns.
The house remained in the Vander Ende family for the remainder of the 18th century, but by 1805, the house was passed out of the family. In 1821, Adrian Onderdonk purchased the property for his wife Ann Wyckoff and himself. Both of them were Dutch descendants themselves. While Onderdonk owned the house, he added a frame addition to the stone structure over the foundation of the original house built before 1660. He also added a fireplace and other decorative additions, which helped transform the home into a suburban house, fitting other homes popping up in New York at the time.
The home and surrounding property were passed onto the children of Adrian and Ann Onderdonk. Over time, the land was sold off in sections, and in 1912, the house was sold by Gertrude Onderdonk Schoonmaker, the daughter of Adrian and Ann.
Over the course of the 20th century, the area surrounding the house transformed from suburban to industrial, and by 1924, the house and surrounding property was put into industrial use, serving as an office, caretakers house, and spacecraft parts manufacturing building. However, all of the industrial buildings on the property were torn down in 1973, but luckily, residents in the area were able to prevent the house from being torn down as well. These residents established the Greater Ridgewood Historical Society in 1975, and they quickly raised funds to restore the house, which had been damaged by a fire. The public was given access to the house beginning in 1982. The home was listed on the National Register of Historic Places in 1977 and received New York City landmark status in 1995.